Package: chainbinomial 0.1.9
chainbinomial: Chain Binomial Models for Analysis of Infectious Disease Data
Implements the chain binomial model for analysis of infectious disease data. Contains functions for calculating probabilities of the final size of infectious disease outbreaks using the method from D. Ludwig (1975) <doi:10.1016/0025-5564(75)90119-4> and for outbreaks that are not concluded, from Lindstrøm et al. (2024) <doi:10.48550/arXiv.2403.03948>. The package also contains methods for estimation and regression analysis of secondary attack rates.
Authors:
chainbinomial_0.1.9.tar.gz
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chainbinomial.pdf |chainbinomial.html✨
chainbinomial/json (API)
NEWS
| # Install 'chainbinomial' in R: |
| install.packages('chainbinomial', repos = c('https://opisthokonta.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/opisthokonta/chainbinomial/issues
- heasman_reid_1961_chains - Common Cold Data
- heasman_reid_1961_crowding - Common Cold Data
- heasman_reid_1961_intro_case_status - Common Cold Data
Last updated 1 months agofrom:c5d87553c7. Checks:1 OK, 7 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 19 2025 |
| R-4.5-win | WARNING | Feb 19 2025 |
| R-4.5-mac | WARNING | Feb 19 2025 |
| R-4.5-linux | WARNING | Feb 19 2025 |
| R-4.4-win | WARNING | Feb 19 2025 |
| R-4.4-mac | WARNING | Feb 19 2025 |
| R-4.3-win | WARNING | Feb 19 2025 |
| R-4.3-mac | WARNING | Feb 19 2025 |
Exports:cbmoddcbhyperdchainbinomecbhyperechainbinomestimate_sarestimate_sar_cbhyperglancepchainbinomrchainbinomtidyvarchainbinom
Dependencies:generics
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fitting models for the Transmission Probability with Chain Binomial response | cbmod |
| Extract Model Coefficient for cbmod Fits | coef.cbmod |
| Confidence intervals for cbmod Object. | confint.cbmod |
| Confidence intervals for sar Object. | confint.sar |
| Confidence intervals for sar2 Object. | confint.sar2 |
| The Hyper Chain Binomial distribution | dcbhyper ecbhyper |
| The Chain Binomial distribution | dchainbinom echainbinom pchainbinom rchainbinom varchainbinom |
| Estimate Transmission Probability of the Chain Binomial Model | estimate_sar |
| Estimate Secondary Attack Rate of the Hyper Chain Binomial Model | estimate_sar_cbhyper |
| Glance at a cbmod object | glance.cbmod |
| Common Cold Data | heasman_reid_1961 heasman_reid_1961_chains heasman_reid_1961_crowding heasman_reid_1961_intro_case_status |
| Predict Method for cbmod Fits | predict.cbmod |
| Extract Model Residuals for cbmod Fits | residuals.cbmod |
| Summary of cbmod Object. | summary.cbmod |
| Tidy a cbmod object | tidy.cbmod |
| Variance-Covariance Matrix of cbmod Object. | vcov.cbmod |
